Ensembl Dog

 

Explore the Canis familiaris genome

Search Ensembl Canis familiaris

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e.g. chromosome 3 or 23:10000..200000 or Q59FM4.1

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chromosome 1 chromosome 2 chromosome 3 chromosome 4 chromosome 5 chromosome 6 chromosome 7 chromosome 8 chromosome 9 chromosome 10 chromosome 11 chromosome 12 chromosome 13 chromosome 14 chromosome 15 chromosome 16 chromosome 17 chromosome 18 chromosome 19 chromosome 20 chromosome 21 chromosome 22 chromosome 23 chromosome 24 chromosome 25 chromosome 26 chromosome 27 chromosome 28 chromosome 29 chromosome 30 chromosome 31 chromosome 32 chromosome 33 chromosome 34 chromosome 35 chromosome 36 chromosome 37 chromosome 38 chromosome X chromosome MT Dog karyotype selector

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About the Dog genome

Assembly

Tasha the boxer This site provides the gene annotation set based on the whole genome shotgun (WGS) assembly CanFam2.0, which was sequenced and assembled by the Broad Institute of MIT/Harvard.The assembly was released in May 2005.

For more information, see Lindblad-Toh, K, et al. (2005). Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 438, 803-819.

Annotation

The gene build was run via a reasonably standard Ensembl mammalian pipeline, modifed to make optimal choices of source proteins for each gene. This analysis gives 22874 genes with 29128 transcripts.

What's New in Ensembl 44

Canis familiaris News

  • Variation updates
    All species with variation data now have a failed_variation table. Also, in species that have duplicate variations (with the same mapping but different IDs), these have been put into the variation_synonym table.

General News

  • ncRNAs for Ensembl chordates
    All Ensembl genebuild databases (i.e. excluding the imported invertebrate databases for mosquitoes, fruit fly, worm and yeast) have been updated with new ncRNA data.
  • Compara updates

    Pairwise alignments

    • Platypus (Ornithorhynchus anatinus) OANA5 BLASTZ_NET vs Mus musculus (NCBIM36)
    • Cat (Felis catus) BLASTZ_NET vs Canis familiaris (BROADD2)
    • Treeshrew (Tupaia belangeri) BLASTZ_NET vs Homo sapiens (NCBI36)
    • Hedgehog (Erinaceus europaeus) BLASTZ_NET vs Homo sapiens (NCBI36)
    • Opossum (Monodelphis domestica) BROAD5 (new assembly) BLASTZ_NET vs Homo sapiens (NCBI36)
    • Bushbaby (Otolemur garnetti) (2X genome, new species) BLASTZ_NET vs Homo sapiens (NCBI36)
    • Ground squirrel (Spermophilus tridecemlineatus) (2X genome, new species) BLASTZ_NET vs Homo sapiens (NCBI36)
    • Little brown bat (Myotis lucifugus) (2X genome, new species) BLASTZ_NET vs Homo sapiens (NCBI36)

    Multiple alignments

    PECAN (vertebrates) 10 ways.
    Read more...
  • Schema changes
    There have been no major schema changes this release, however we are starting to systematically work through the schema to make sure that all column types are appropriate for the data they are likely to hold.
    Read more...

More news...

Statistics

Assembly: CanFam 2.0, May 2006
Genebuild: Ensembl, Dec 2006
Database version: 44.2b
Known genes: 14,121
Projected genes: 3,105
Novel genes: 2,088
Pseudogenes: 1,742
RNA genes: 1,926
Genscan gene predictions: 47,163
Gene exons: 216,536
Gene transcripts: 27,310
SNPs: 3,195,338
Base Pairs*: 2,384,996,543
Golden Path Length**: 2,531,673,953

* Total number of base pairs = sum of lengths of DNA table

** Reference assembly (Golden path) length = sum of non-redundant top level seq regions

 

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Ensembl release 44 - Apr 2007
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