Ensembl S.cerevisiae

 

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About the S. cerevisiae genome

Assembly and Annotation

Saccharomyces cerevisiaeThe data on this site is a direct import of the Saccharomyces Genome Database dataset for the Saccharomyces cerevisiae S288C genome. For this release a new genomic feature (2 Micron Plasmid) is introduced. No additional genebuild was carried out, but a series of blast runs was done to provide ESTs and other similarity data.

We have included S.cerevisiae into the Ensembl system to allow people to access the data through the Ensembl user interface (both for visualisation and data mining) and to provide cross-species integration through our comparative genomics resources (such as homologous gene links and protein family/domain pages).

The canonical data for S.cerevisiae is managed at SGD.

Image courtesy American Society for Microbiology

What's New in Ensembl 44

Saccharomyces cerevisiae News

There is no Saccharomyces cerevisiae-specific news this release.

General News

  • ncRNAs for Ensembl chordates
    All Ensembl genebuild databases (i.e. excluding the imported invertebrate databases for mosquitoes, fruit fly, worm and yeast) have been updated with new ncRNA data.
  • Compara updates

    Pairwise alignments

    • Platypus (Ornithorhynchus anatinus) OANA5 BLASTZ_NET vs Mus musculus (NCBIM36)
    • Cat (Felis catus) BLASTZ_NET vs Canis familiaris (BROADD2)
    • Treeshrew (Tupaia belangeri) BLASTZ_NET vs Homo sapiens (NCBI36)
    • Hedgehog (Erinaceus europaeus) BLASTZ_NET vs Homo sapiens (NCBI36)
    • Opossum (Monodelphis domestica) BROAD5 (new assembly) BLASTZ_NET vs Homo sapiens (NCBI36)
    • Bushbaby (Otolemur garnetti) (2X genome, new species) BLASTZ_NET vs Homo sapiens (NCBI36)
    • Ground squirrel (Spermophilus tridecemlineatus) (2X genome, new species) BLASTZ_NET vs Homo sapiens (NCBI36)
    • Little brown bat (Myotis lucifugus) (2X genome, new species) BLASTZ_NET vs Homo sapiens (NCBI36)

    Multiple alignments

    PECAN (vertebrates) 10 ways.
    Read more...
  • Schema changes
    There have been no major schema changes this release, however we are starting to systematically work through the schema to make sure that all column types are appropriate for the data they are likely to hold.
    Read more...


More news...

Statistics

Assembly: SGD1.01, Dec 2006
Genebuild: SGD, Dec 2006
Database version: 44.1f
Known genes: 6,530
Novel genes: 167
Pseudogenes: 21
RNA genes: 404
Genscan gene predictions: 5,073
Genefinder gene predictions: 3,239
Gene exons: 7,045
Gene transcripts: 6,697
Base Pairs*: 12,162,996
Golden Path Length**: 12,162,996

* Total number of base pairs = sum of lengths of DNA table

** Reference assembly (Golden path) length = sum of non-redundant top level seq regions


 

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Ensembl release 44 - Apr 2007
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